Nature CommunicationsDDA-BERT: end-to-end training for data-dependent acquisition mass spectrometry-based proteomicsJun APu LiuYingying SunJiaying LinXiaofan ZhangZongxiang NieJingnan LiuZhiguo YuYuqi ZhangZiyuan XingYi ChenTiannan Guo2026-04-27Full textDOI https://doi.org/10.1038/s41467-026-72246-6